PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003687
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family BBR-BPC
Protein Properties Length: 344aa    MW: 39193.8 Da    PI: 10.272
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003687genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind293.21.1e-89403431301
    GAGA_bind   1 mdddgsrernkgyye.........paaslken....lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85 
                  md+ g   r+  +y+         p+ ++k++    +  ++  +iaerda+ +er+ alse+kaa+ erd a + rd+a++er+ al er+ +l al 
  DCAR_003687  40 MDKGGR-ARHMEFYKgahsqwnmvPQYQMKDQnaflMPGKIAHIIAERDAAFEERDRALSERKAALEERDSAIQLRDAAISERDSALREREIALEALR 136
                  555554.59999999999999888555666441111455788899***************************************************** PP

    GAGA_bind  86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                  ++e+++++a   + ++ +g+k ++++ +   p     a++++e  +++a+p++   +e  +++++k r+ +k   +k + k+kk +e+     +++ +
  DCAR_003687 137 FQETTMSTAW--NNTIQRGSKRVHHVAN--YP--LVAAYNTKEGAITDAFPLQAISSEGVKAHQEKPRKPKKFVSSKSQLKAKKINEDL----NRHVT 224
                  **99976554..6778899999998877..22..2457778899999****99988888887777744443333333344666655555....55555 PP

    GAGA_bind 184 derskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
                   + skae++  +l ++ ++ +Dest+P+PvCsCtG+++qCYkWGnGGWqS+CCttt S+yPLP+ +++r++R++grKmS+++f++lL +LaaeG+d  
  DCAR_003687 225 TDWSKAEWDAKNLgSMKQIIYDESTMPIPVCSCTGVQHQCYKWGNGGWQSSCCTTTKSQYPLPQLPNKRHSRMGGRKMSGNVFSRLLTRLAAEGHDTR 322
                  5569*********88*********************************************************************************** PP

    GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
                   p+DLk+hWAkHGtn+++tir
  DCAR_003687 323 MPLDLKEHWAKHGTNRYITIR 343
                  ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-10840343IPR010409GAGA-binding transcriptional activator
PfamPF062173.5E-8440343IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSLKFDSLQI GRFRGLRRVD IINSLVETKL SIFPLTCNFM DKGGRARHME FYKGAHSQWN  60
MVPQYQMKDQ NAFLMPGKIA HIIAERDAAF EERDRALSER KAALEERDSA IQLRDAAISE  120
RDSALREREI ALEALRFQET TMSTAWNNTI QRGSKRVHHV ANYPLVAAYN TKEGAITDAF  180
PLQAISSEGV KAHQEKPRKP KKFVSSKSQL KAKKINEDLN RHVTTDWSKA EWDAKNLGSM  240
KQIIYDESTM PIPVCSCTGV QHQCYKWGNG GWQSSCCTTT KSQYPLPQLP NKRHSRMGGR  300
KMSGNVFSRL LTRLAAEGHD TRMPLDLKEH WAKHGTNRYI TIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804622.11e-130PREDICTED: protein BASIC PENTACYSTEINE4-like
RefseqXP_009804621.11e-130PREDICTED: protein BASIC PENTACYSTEINE4-like
RefseqXP_016442557.11e-130PREDICTED: protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-101BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A068TKY01e-136A0A068TKY0_COFCA; Uncharacterized protein
STRINGVIT_03s0038g00840.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-102basic pentacysteine 4